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2025

The Genome of Apera spica-venti, a major grass weed
John Lemas, Jevgenija Ņečajeva, Jacob Montgomery, Sofia Marques-Hill, Victor Llaca, Kevin Fengler, Lena Ulber, Dagmar Rissel, Josef Soukup, Kateřina Hamouzová, Fatemeh Abdollahi, David Nelson, Todd A Gaines, Eric Patterson
Chromosome-Level Assemblies of the Allohexaploid Genomes of Conyza sumatrensis and Conyza bonariensis
Anthony Côrtes Gomes, Jacob Montgomery, André Lucas Simões Araujo, Sarah Morran, Luan Cutti, Eric Patterson, Sofia Marques Hill, Maor Matzrafi, Anil Shrestha, Aldo Merotto, Fatemeh Abdollahi, David R Nelson, Victor Llaca, Kevin Fengler, Camila Ferreira de Pinho, Todd A Gaines
A rearranged Amaranthus palmeri extrachromosomal circular DNA confers resistance to glyphosate and glufosinate
Pâmela Carvalho-Moore, Ednaldo A Borgato, Luan Cutti, Aimone Porri, Ingo Meiners, Jens Lerchl, Jason K Norsworthy, Eric L Patterson
Evaluating the role of post-harvest glyphosate application in enhancing weed control in winter wheat
Ahmet Tansel Serim, Ünal Asav, Yalçın Kaya, Bülent Başaran, Eric L Patterson
Unintentional herbicide resistance in Lolium hybridum and Lolium perenne cultivars and its impact on weedy populations
Rebecka Dücker, Jean Wagner, Lena Kristin Oerke, Juana Abad Montoya Venegas, Ednaldo A Borgato, Dominik Dicke, Johannes Herrmann, Martin Hess, Eric L Patterson
A High-Quality Genome Resource for the Oak Wilt Pathogen Bretziella fagacearum
Karandeep Chahal, Mohit Mahey, Carmen Medina-Mora, Steven Ahrendt, Robert Riley, Anna Lipzen, Juying Yan, Emily Savage, Maxim Koriabine, Vivian Ng, Igor V Grigoriev, Thomas C Harrington, Eric L Patterson, Timothy D Miles, Monique L Sakalidis
Strategic fertilizer placement in containers influences liverwort (Marchantia polymorpha) growth, reproduction, and competitiveness with ornamentals
Manjot Kaur Sidhu, Sushila Chaudhari, Roberto Lopez, Eric L Patterson, Debalina Saha
Climate-Driven Challenges in Weed Management for Ornamental Crop Production in the United States: A Review
Supti Saha Mou, Miranda J Haus, Zachary D Hayden, Eric L Patterson, Debalina Saha
Agronomic predictors of herbicide-resistance in horseweed (Erigeron canadensis) for proactive management in Michigan
Juliano RM Sulzback, Eric L Patterson, Erin E Burns
Assembly and Annotation of the Tetraploid Salsola tragus (Russian thistle) Genome
John M Lemas, Eric L Patterson, Luan Cutti, Sarah Morran, Nicholas A Johnson, Jacob Montgomery, Fatemeh Abdollahi, David R Nelson, Victor Llaca, Kevin Fengler, Philip Westra, Todd A Gaines
Chromosome-level assemblies of Amaranthus palmeri, Amaranthus retroflexus, and Amaranthus hybridus allow for genomic comparisons and identification of a sex-determining region
Damilola A Raiyemo, Jacob S Montgomery, Luan Cutti, Fatemeh Abdollahi, Victor Llaca, Kevin Fengler, Alexander J Lopez, Sarah Morran, Christopher A Saski, David R Nelson, Eric L Patterson, Todd A Gaines, Patrick J Tranel
FHY3/FAR1 transposable elements generate adaptive genetic variation in the Bassia scoparia genome
Nathan Hall, Jacob Montgomery, Jinyi Chen, Christopher Saski, Maor Matzrafi, Phil Westra, Todd Gaines, Eric Patterson

2024

Genomic structural variation and herbicide resistance
Nicholas A Johnson, John Lemas, Jacob Montgomery, Todd Gaines, Eric Patterson
Preemergent Liverwort Control by Organic Mulching in Containerized Ornamental Production
Manjot Kaur Sidhu, Sushila Chaudhari, Roberto G Lopez, Eric L Patterson, Debalina Saha
Inheritance and Resistance Mechanisms of Field-Evolved Resistance to Pyrethroids in a Fall Armyworm (Spodoptera frugiperda J.E. Smith) (Lepidoptera: Noctuidae) Strain from Puerto Rico
Omar Alejandro Posos-Parra, Barry R Pittendrigh, John C Wise, Christina DiFonzo, Eric Patterson, David Mota-Sanchez
Assessing the Effects of Allelopathic Properties of Organic Mulches on Liverwort Control in Container-grown Ornamentals
Manjot K Sidhu, Sushila Chaudhari, Roberto Lopez, Eric Patterson, Debalina Saha
Optimizing molecular assays for glyphosate and ALS-inhibitor resistance diagnostics in four weed species
Juliano RM Sulzback, Ednaldo A Borgato, Luan Cutti, Erin C Hill, Erin E Burns, Eric L Patterson
Current status of community resources and priorities for weed genomics research
Jacob Montgomery, Sarah Morran, Dana R MacGregor, J Scott McElroy, Paul Neve, Célia Neto, Martin M Vila-Aiub, Maria Victoria Sandoval, Analia I Menéndez, Julia M Kreiner, Longjiang Fan, Ana L Caicedo, Peter J Maughan, Bianca Assis Barbosa Martins, Jagoda Mika, Alberto Collavo, Aldo Merotto Jr, Nithya K Subramanian, Muthukumar V Bagavathiannan, Luan Cutti, Md Mazharul Islam, Bikram S Gill, Robert Cicchillo, Roger Gast, Neeta Soni, Terry R Wright, Gina Zastrow-Hayes, Gregory May, Jenna M Malone, Deepmala Sehgal, Shiv Shankhar Kaundun, Richard P Dale, Barend Juan Vorster, Bodo Peters, Jens Lerchl, Patrick J Tranel, Roland Beffa, Alexandre Fournier-Level, Mithila Jugulam, Kevin Fengler, Victor Llaca, Eric L Patterson, Todd A Gaines
Characterization of the inheritance of field-evolved resistance to diamides in the fall armyworm (Spodoptera frugiperda) (Lepidoptera: Noctuidae) population from Puerto Rico
Omar Posos-Parra, David Mota-Sanchez, Barry R Pittendrigh, John C Wise, Christina D DiFonzo, Eric Patterson
Response of conventional sunflower cultivars to drift rates of synthetic auxin herbicides
Ahmet Tansel Serim, Eric L Patterson
A transposable element insertion in IAA16 disrupts splicing and causes dicamba resistance in Bassia scoparia
JS Montgomery, N Soni, S Marques Hill, S Morran, E Patterson, S Edwards
A phased chromosome-level genome assembly provides insights into the evolution of sex chromosomes in Amaranthus tuberculatus
Damilola A Raiyemo, Luan Cutti, Eric L Patterson, Victor Llaca, Kevin Fengler, Jacob S Montgomery, Sarah Morran, Todd A Gaines, Patrick J Tranel
Enhanced metabolic detoxification is associated with fluroxypyr resistance in Bassia scoparia
​Olivia E Todd, Eric L Patterson, Eric P Westra, Scott J Nissen, André Lucas Simões Araujo, William B Kramer, Franck E Dayan, Todd A Gaines

2023

Current and future glyphosate use in European agriculture
​Paul Neve, Maor Matzrafi, Lena Ulber, Bàrbara Baraibar, Roland Beffa, Xavier Belvaux, Joel Torra Farré, Hüsrev Mennan, Björn Ringselle, Jukka Salonen, Josef Soukup, Sabine Andert, Rebecka Duecker, Emilio Gonzalez, Katerina Hamouzová, Isabella Karpinski, Ilias S. Travlos, Francesco Vidotto, Per Kudsk
Genome-wide study of glutathione transferases and their regulation in flufenacet susceptible and resistant black-grass (Alopecurus myosuroides Huds.)
Evlampia Parcharidou, Rebecka Dücker, Roland Beffa 
Recombinant glutathione transferases from flufenacet-resistant black-grass (Alopecurus myosuroides Huds.) form different flufenacet metabolites and differ in their interaction with pre- and post-emergence herbicides
Evlampia Parcharidou, Rebecka Dücker, Peter Zöllner, Susanne Ries, Roberto Orru, Roland Beffa
Investigations into differential glyphosate sensitivity between two horseweed (Conyza canadensis) growth types.
Fisher, Justine L., Christy L. Sprague, 
Eric L. Patterson, and John A. Schramski.​
Homoeologous evolution of the allotetraploid genome of Poa annua L
Benson, Christopher W., Matthew R. Sheltra, Peter J. Maughan, Eric N. Jellen, Matthew D. Robbins, B. Shaun Bushman, 
Eric L. Patterson, Nathan D. Hall, and David R. Huff.​
A bioassay to determine Poa annua responses to indaziflam
Pritchard, Benjamin D., Jose J. Vargas, Mohit Mahey, James T. Brosnan, and 
Eric L. Patterson
Developing Integrated Strategies to Address Emerging Weed Management Challenges in Christmas Tree Production
Gallina, Greta, Bert Cregg, 
Eric Patterson, and Debalina Saha​
Subtelomeric 5-enolpyruvylshikimate-3-phosphate synthase copy number variation confers glyphosate resistance in Eleusine indica
Zhang, Chun, Nicholas A. Johnson, Nathan Hall, Xingshan Tian, Qin Yu, and 
Eric L. Patterson.
Alternative Integrated Weed Management Options for Clopyralid-Resistant Common Ragweed
Gallina, Greta, Bert Cregg, 
Eric L. Patterson, Erin Hill, and Debalina Saha.
The International Weed Genomics Consortium: Community Resources for Weed Genomics Research
Jacob S. Montgomery, Sarah Morran, Dana R. MacGregor, J. Scott McElroy, Paul Neve,  Célia , Martin M. Vila-, Maria Victoria Sandoval, Analia I. Menéndez, Julia M.  Kreiner, Longjiang Fan, Ana L. Caicedo, Peter J. Maughan, Bianca Assis Barbosa Martins,  Jagoda Mika, Alberto Collavo, Aldo Merotto Jr., Nithya K. Subramanian, Muthukumar  V. Bagavathiannan, Luan Cutti, Md. Mazharul Islam, Bikram S Gill, Robert Cicchillo, Roger Gast, Neeta Soni, Terry R. Wright, Gina Zastrow-Hayes, Gregory May, Jenna M. Malone, Deepmala Sehgal, Shiv Shankhar Kaundun, Richard P. Dale, Barend Juan Vorster, Bodo, Jens Lerchl, Patrick J. Tranel, Roland Beffa, Mithila Jugulam, Kevin Fengler, Victor Llaca, Eric L. Patterson, Todd Gaines
Enhanced metabolic detoxification is associated with fluroxypyr resistance in Bassia scoparia
Todd, Olivia E., Eric L. Patterson, Eric P. Westra, Scott J. Nissen, André Lucas Simões Araujo, William B. Kramer, Franck E. Dayan, and Todd A. Gaines

2022

An in-frame deletion mutation in the degron tail of auxin coreceptor IAA2 confers resistance to the herbicide 2,4-D in Sisymbrium orientale
Marcelo RA de Figueiredo, Anita Küpper, Jenna M Malone, Tijana Petrovic, Ana Beatriz TB de Figueiredo, Grace Campagnola, Olve B Peersen, Kasavajhala VSK Prasad, Eric L Patterson, Anireddy SN Reddy, Martin F Kubeš, Richard Napier, Franck E Dayan, Christopher Preston, Todd A Gaines
An in-frame deletion mutation in the degron tail of auxin co-receptor IAA2 confers resistance to the herbicide 2, 4-D in Sisymbrium orientale
Marcelo RA de Figueiredo, Anita Küpper, Jenna M Malone, Tijana Petrovic, Ana Beatriz TB de Figueiredo, Grace Campagnola, Olve B Peersen, Kasavajhala VSK Prasad, Eric L Patterson, Anireddy SN Reddy, Martin F Kubeš, Richard Napier, Christopher Preston, Todd A Gaines
A Review of Chemical Weed Control Practices in Christmas Tree Production in the United States
​
GC Gallina, BM Cregg, EL Patterson, D Saha
Mitotic-inhibiting herbicide response variation in goosegrass (Eleusine indica) with a Leu-136-Phe substitution in α-tubulin
Eli C Russell, John M Peppers, Claudia Ann Rutland, Jinesh Patel, Nathan D Hall, Audrey V Gamble, J Scott McElroy
Overexpression of EiKCS confers paraquat‐resistance in rice (Oryza sativa L.) by promoting the polyamine pathway
Q Luo, S Chen, J Zhu, L Ye, ND Hall, S Basak, JS McElroy, Y Chen

2021

Target‐site resistance to trifluralin is more prevalent in annual ryegrass populations from Western Australia
Chen, Jinyi, Qin Yu, Mechelle Owen, Heping Han, Eric Patterson, Chad Sayer, and Stephen Powles
Genomic‐based epidemiology reveals independent origins and gene flow of glyphosate resistance in Bassia scoparia populations across North America.
Ravet, Karl, Crystal D. Sparks, Andrea L. Dixon, Anita Küpper, Eric P. Westra, Dean J. Pettinga, Patrick J. Tranel et al
Identification of Two Eleusine indica (Goosegrass) Biotypes of Cool-Season Turfgrass Resistant to Dithiopyr
Matthew T. Elmore, Katherine H. Diehl, Rong Di, Jinyi Chen, Eric L. Patterson, James T. Brosnan, Robert N. Trigiano, Daniel P. Tuck, Sarah L. Boggess, Steven McDonald
Differential Expression of Genes Associated with Non‐Target Site Resistance in Poa Annua with Target Site Resistance to Acetolactate Synthase Inhibitors
Laforest, Martin, Brahim Soufiane, 
Eric L. Patterson, José J. Vargas, Sarah L. Boggess, Logan C. Houston, Robert N. Trigiano, and James T. Brosnan
Dinitroaniline Herbicide Resistance and Mechanisms in Weeds
Chen, Jinyi, Qin Yu, Eric L. Patterson, Chad Sayer, and Stephen Powles
Environmental cues affecting horseweed (Conyza canadensis) growth types and their sensitivity to glyphosate
 Schramski, John A., Christy L. Sprague, and Eric L. Patterson.
A needle in a seedstack: An improved method for detection of rare alleles in bulk seed testing through KASP.
Brusa, Anthony, 
Eric L. Patterson, Todd A. Gaines, Kevin Dorn, Philip Westra, Crystal D. Sparks, and Don Wyse.
Detection of subgenome bias using an anchored syntenic approach in Eleusine coracana (finger millet)
ND Hall, JD Patel, JS McElroy, LR Goertzen
First genome size assessments for Marshallia and Balduina (Asteraceae, Helenieae) reveal significant cytotype diversity
T Garnatje, J Pellicer, J Vallès, ND Hall, C Hansen, L Goertzen
The impact of polyploidization on the evolution of weed species: historical understanding and current limitations
​
CA Rutland, ND Hall, JS McElroy

2020

Impact of Climate Change on Population Dynamics and Herbicide Resistance in Kochia (Bassia scoparia (L.) AJ Scott)
Chen, Jinyi, Erin Burns, Margaret Fleming, and 
Eric Patterson
Diversity of α‐tubulin transcripts in Lolium rigidum.
Chen, Jinyi, Zhizhan Chu, Heping Han, 
Eric L. Patterson, Qin Yu, and Stephen Powles.
Coexpression Clusters and Allele-Specific Expression in Metabolism-Based Herbicide Resistance.
Giacomini, Darci A., Eric L. Patterson, Anita Küpper, Roland Beffa, Todd A. Gaines, and Patrick J. Tranel.

Draft Genomes of Amaranthus tuberculatus, Amaranthus hybridus, and Amaranthus palmeri
Montgomery, Jacob S., Darci Giacomini, Bridgit Waithaka, Christa Lanz, Brent P. Murphy, Ruth Campe, Jens Lerchl, Andreas Landes, Fanny Gatzmann, Antoine Janssen, Rudie Antonise, 
Eric Patterson, Detlef Weigel, Patrick J Tranel. 
Homogeneity among glyphosate-resistant Amaranthus palmeri in geographically distant locations.
Molin, William T., 
Eric L. Patterson, and Christopher A. Saski.
Annual bluegrass (Poa annua) resistance to indaziflam applied early‐postemergence.
 
Brosnan, James T., José J. Vargas, Bruce Spesard, Derek Netzband, John M. Zobel, Jinyi Chen, and Eric L. Patterson

2019

Omics Potential in Herbicide-Resistant Weed Management
Eric L Patterson, Christopher Saski, Anita Küpper, Roland Beffa, and Todd A. Gaines
The Draft Genome of Kochia scoparia and the Mechanism of Glyphosate Resistance via Transposon-Mediated EPSPS Tandem Gene Duplication.
Eric L Patterson, Christopher A Saski, Daniel B Sloan, Patrick J Tranel, Philip Westra, Todd A Gaines
Protoporphyrinogen oxidase (PPO) inhibitor–resistant waterhemp (Amaranthus tuberculatus) from Nebraska is multiple herbicide resistant: confirmation, mechanism of resistance, and management
 Debalin Sarangi, Trey Stephens, Abigail L. Barker, Eric L. Patterson, Todd A. Gaines, and Amit J. Jhala
Predicting herbicide movement across semi-permeable membranes using three phase partitioning
Hudson K Takano, Eric L. Patterson, Scott J. Nissen, Franck E. Dayan, and Todd A. Gaines.
Molecular mechanisms of adaptive evolution revealed by global selection for glyphosate resistance.
Gaines, Todd A., 
Eric L. Patterson, and Paul Neve.

2018

Interspecific and intraspecific transference of metabolism‐based mesotrione resistance in dioecious weedy Amaranthus
Maxwel C. Oliveira, Todd A. Gaines, Eric L. Patterson, Amit J. Jhala, Suat Irmak, Keenan Amundsen, and Stevan Z. Knezevic.
Exploring the fate of mRNA in aging seeds: protection, destruction, or slow decay?.
Margaret B. Fleming, Eric L. Patterson, Patrick A. Reeves, Christopher M. Richards, Todd A. Gaines, and Christina Walters.
The power and potential of genomics in weed biology and management
 Karl Ravet, Eric L. Patterson, Hansjörg Krähmer, Kateřina Hamouzová, Longjiang Fan, Marie Jasieniuk, Amy Lawton‐Rauh et al
Population genetic structure in glyphosate-resistant and-susceptible Palmer amaranth (Amaranthus palmeri) populations using genotyping-by-sequencing (GBS).
Anita Küpper, Harish K. Manmathan, Darci Giacomini, 
Eric L. Patterson, William B. McCloskey, and Todd A. Gaines
Increased chalcone synthase (CHS) expression is associated with dicamba resistance in Kochia scoparia.
Dean J. Pettinga, Junjun Ou, Eric L. Patterson, Mithila Jugulam, Philip Westra, and Todd A. Gaine
Reversing resistance to tembotrione in an Amaranthus tuberculatus (var. rudis) population from Nebraska, USA with cytochrome P450 inhibitors.
Maxwel C. Oliveira, Todd A. Gaines, Franck E. Dayan, Eric L. Patterson, Amit J. Jhala, and Stevan Z. Knezevic

2017

Glyphosate resistance and EPSPS gene duplication: Convergent evolution in multiple plant species
Eric L. Patterson, Dean J. Pettinga, Karl Ravet, Paul Neve, and Todd A. Gaines.
Pollen-mediated gene flow from glyphosate-resistant common waterhemp (Amaranthus rudis Sauer): consequences for the dispersal of resistance genes
 Debalin Sarangi, Andrew J. Tyre, Eric L. Patterson, Todd A. Gaines, Suat Irmak, Stevan Z. Knezevic, John L. Lindquist, and Amit J. Jhala
A KASP Genotyping Method to Identify Northern Watermilfoil, Eurasian Watermilfoil, and Their Interspecific Hybrids
Eric L. Patterson, Margaret B. Fleming, Kallie C. Kessler, Scott J. Nissen, and Todd A. Gaines.
Indaziflam: A New Cellulose Biosynthesis Inhibiting Herbicide Provides Long‐Term Control of Invasive Winter Annual Grasses
Derek J. Sebastian, Margaret B. Fleming, Eric L. Patterson, James R. Sebastian, and Scott J. Nissen
Multiple Resistance to Glyphosate and Acetolactate Synthase Inhibitors in Palmer Amaranth (Amaranthus palmeri) Identified in Brazil.
Anita Küpper, Ednaldo A. Borgato, Eric L. Patterson, Acácio Gonçalves Netto, Marcelo Nicolai, Saul JP de Carvalho, Scott J. Nissen, Todd A. Gaines, and Pedro J. Christoffoleti.

2016

Confirmation and mechanism of glyphosate resistance in tall windmill grass (Chloris elata) from Brazil.
Caio ACG Brunharo, 
Eric L. Patterson, Daniela R. Carrijo, Marcel SC de Melo, Marcelo Nicolai, Todd A. Gaines, Scott J. Nissen, and Pedro J. Christoffoleti.
EPSPS Gene Copy Number and Whole-Plant Glyphosate Resistance Level in Kochia scoparia.
Todd A. Gaines, Abigail L. Barker, Eric L. Patterson, Philip Westra, Eric P. Westra, Robert G. Wilson, Prashant Jha, Vipan Kumar, and Andrew R. Kniss.
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